Table of Contents
VOLUME 1
Section I. General Issues in Clinical Microbiology
Volume Editor: James H. Jorgensen
Section Editor: Melvin P. Weinstein
1. Introduction to the Ninth Edition of the Manual of Clinical Microbiology, Patrick R. Murray
2. Laboratory Management, W. Michael Dunne, Jr., and Mark T. LaRocco
3. Laboratory Design, Michael L. Wilson and L. Barth Reller
4. Laboratory Consultation, Communication, and Information Systems, Joseph M. Campos
5. General Principles of Specimen Collection and Handling, J. Michael Miller, Karen Krisher, and Harvey T. Holmes
6. Procedures for the Storage of Microorganisms, Cathy A. Petti, Karen C. Carroll, and Larry G. Reimer
Section II. The Clinical Microbiology Laboratory in Infection Detection, Prevention, and Control
Volume Editor: Michael A. Pfaller
Section Editor: Loreen A. Herwaldt
7. Decontamination, Disinfection, and Sterilization, Andreas F. Widmer and Reno Frei
8. Prevention and Control of Laboratory-Acquired Infections, Michael A. Noble
9. Laboratory Detection of Potential Agents of Bioterrorism, Rosemary Humes and James W. Snyder
10. Infection Control Epidemiology and Clinical Microbiology, Daniel J. Diekema and Michael A. Pfaller
11. Laboratory Procedures for the Epidemiological Analysis of Microorganisms, David R. Soll, Claude Pujol, and Shawn R. Lockhart
12. Investigation of Foodborne and Waterborne Disease Outbreaks, Timothy F. Jones
Section III. Diagnostic Technologies in Clinical Microbiology
Volume Editor: James H. Jorgensen
Section Editor: Melvin P. Weinstein
13. Microscopy, Danny L. Wiedbrauk
14. Principles of Stains and Media, Kimberle C. Chapin
15. Manual and Automated Systems for Detection and Identification of Microorganisms, Karen C. Carroll and Melvin P. Weinstein
16. Molecular Detection and Identification of Microorganisms, Frederick S. Nolte and Angela M. Caliendo
17. Susceptibility Testing Instrumentation and Computerized Expert Systems for Data Analysis and Interpretation, Sandra S. Richter and Mary Jane Ferraro
18. Immunoassays for the Diagnosis of Infectious Diseases, A. Betts Carpenter
Section IV. Bacteriology
Volume Editor: Ellen Jo Baron
Section Editors: J. Stephen Dumler, Guido Funke, J. Michael Janda, Irving Nachamkin, and James Versalovic
GENERAL
19. Taxonomy and Classification of Bacteria, Peter A. R. Vandamme
20. Specimen Collection, Transport, and Processing: Bacteriology, Richard B. Thomson, Jr.
21. Reagents, Stains, and Media: Bacteriology, Kimberle C. Chapin and Tsai-Ling Lauderdale
22. Algorithm for Identification of Aerobic Gram-Positive Cocci, Kathryn L. Ruoff
23. Algorithm for Identification of Aerobic Gram-Positive Rods, Guido Funke
24. Algorithms for Identification of Aerobic Gram-Negative Bacteria, Paul C. Shreckenberger and David Lindquist
25. Algorithm for Identification of Anaerobic Bacteria, Diane M. Citron
26. Algorithms for Identification of Curved and Spiral-Shaped Gram-Negative Rods, Irving Nachamkin
27. Algorithms for Identification of Mycoplasma, Ureaplasma, and Obligate Intracellular Bacteria, J. Stephen Dumler
GRAM-POSITIVE COCCI
28. Staphylococcus, Micrococcus, and Other Catalase-Positive Cocci, Tammy L. Bannerman and Sharon J. Peacock
29. Streptococcus, Barbara Spellerberg and Claudia Brandt
30. Enterococcus, Lúcia Martins Teixeira, Maria da Glória Siqueira Carvalho, and Richard R. Facklam
31. Aerococcus, Abiotrophia, and Other Aerobic Catalase-Negative, Gram-Positive Cocci, Kathryn L. Ruoff
GRAM-POSITIVE RODS
32. Bacillus and Other Aerobic Endospore-Forming Bacteria, Niall A. Logan, Tanja Popovic, and Alex Hoffmaster
33. Listeria and Erysipelothrix, Jacques Bille
34. Coryneform Gram-Positive Rods, Guido Funke and Kathryn A. Bernard
35. Nocardia, Rhodococcus, Gordonia, Actinomadura, Streptomyces, and Other Aerobic Actinomycetes, Patricia S. Conville and Frank G. Witebsky
36. Mycobacterium: General Characteristics, Laboratory Detection, and Staining Procedures, Gaby E. Pfyffer
37. Mycobacterium: Laboratory Characteristics of Slowly Growing Mycobacteria, Véronique Vincent and M. Cristina Gutiérrez
38. Mycobacterium: Clinical and Laboratory Characteristics of Rapidly Growing Mycobacteria, Barbara A. Brown-Elliott and Richard J. Wallace, Jr.
GRAM-NEGATIVE BACTERIA
39. Neisseria, William M. Janda and Charlotte A. Gaydos
40. Actinobacillus, Capnocytophaga, Eikenella, Kingella, Pasteurella, and Other Fastidious or Rarely Encountered Gram-Negative Rods, Alexander von Graevenitz, Reinhard Zbinden, and Reinier Mutters
41. Haemophilus, Mogens Kilian
42. Enterobacteriaceae: Introduction and Identification, J. J. Farmer III, K. D. Boatwright, and J. Michael Janda
43. Escherichia, Shigella, and Salmonella, James P. Nataro, Cheryl A. Bopp, Patricia I. Fields, James B. Kaper, and Nancy A. Strockbine
44. Yersinia, Audrey Wanger
45. Klebsiella, Enterobacter, Citrobacter, Serratia, Plesiomonas, and Other Enterobacteriaceae, Sharon L. Abbott
46. Aeromonas, Amy J. Horneman, Afsar Ali, and Sharon L. Abbott
47. Vibrio and Related Organisms, Sharon L. Abbott, J. Michael Janda, Judith A. Johnson, and J. J. Farmer III
48. Pseudomonas, Edith Blondel-Hill, Deborah A. Henry, and David P. Speert
49. Burkholderia, Stenotrophomonas, Ralstonia, Cupriavidus, Pandoraea, Brevundimonas, Comamonas, Delftia, and Acidovorax, John J. LiPuma, Bart J. Currie, Gary D. Lum, and Peter A. R. Vandamme
50. Acinetobacter, Achromobacter, Chryseobacterium, Moraxella, and Other Nonfermentative Gram-Negative Rods, Paul C. Schreckenberger, Maryam I. Daneshvar, and Dannie G. Hollis
51. Bordetella, Mike J. Loeffelholz and Gary N. Sanden
52. Francisella and Brucella, David Lindquist, May C. Chu, and Will S. Probert
53. Legionella, Paul H. Edelstein
54. Bartonella, Bruno B. Chomel and Jean Marc Rolain
ANAEROBIC BACTERIA
55. Peptostreptococcus, Finegoldia, Anaerococcus, Peptoniphilus, Veillonella, and Other Anaerobic Cocci, Yuli Song and Sydney M. Finegold
56. Propionibacterium, Lactobacillus, Actinomyces, and Other Non-Spore-Forming Anaerobic Gram-Positive Rods, Eija Könönen and William G. Wade
57. Clostridium, Eric A. Johnson, Paula Summanen, and Sydney M. Finegold
58. Bacteroides, Porphyromonas, Prevotella, Fusobacterium, and Other Anaerobic Gram-Negative Rods, Diane M. Citron, Ian R. Poxton, and Ellen Jo Baron
CURVED AND SPIRAL-SHAPED GRAM-NEGATIVE RODS
59. Campylobacter and Arcobacter, Collette Fitzgerald and Irving Nachamkin
60. Helicobacter, James G. Fox and Francis Megraud
61. Leptospira, Paul N. Levett
62. Borrelia, Bettina Wilske, Barbara J. B. Johnson, and Martin E. Schriefer
63. Treponema and Other Human Host-Associated Spirochetes, Victoria Pope, Steven J. Norris, and Robert E. Johnson
MYCOPLASMAS AND OBLIGATE INTRACELLULAR BACTERIA
64. Mycoplasma and Ureaplasma, Ken B. Waites and David Taylor-Robinson
65. Chlamydia and Chlamydophila, Andreas Essig
66. Rickettsia and Orientia, David H. Walker and Donald H. Bouyer
67. Ehrlichia, Anaplasma, and Related Intracellular Bacteria, Juan P. Olano and Maria E. Aguero-Rosenfeld
68. Coxiella, Philippe Brouqui, Thomas Marrie, and Didier Raoult
69. Tropheryma, Didier Raoult, Florence Fenollar, and David Relman
Section V. Antibacterial Agents and Susceptibility Test Methods
Volume Editor: James H. Jorgensen
Section Editors: Mary Jane Ferraro and John D. Turnidge
70. Antibacterial Agents, Joseph D. C. Yao and Robert C. Moellering, Jr.
71. Mecanisms of Resistance to Antibacterial Agents, Louis B. Rice and Robert A. Bonomo
72. Susceptibility Test Methods: General Considerations, John D. Turnidge, Mary Jane Ferraro, and James H. Jorgensen
73. Susceptibility Test Methods: Dilution and Disk Diffusion Methods, James H. Jorgensen and John D. Turnidge
74. Special Phenotypic Methods for Detecting Antibacterial Resistance, Jana M. Swenson, Jean B. Patel, and James H. Jorgensen
75. Susceptibility Test Methods: Fastidious Bacteria, Janet Fick Hindler and Jean B. Patel
76. Susceptibility Test Methods: Anaerobic Bacteria, Diane M. Citron and David W. Hecht
77. Susceptibility Test Methods: Mycobacteria, Nocardia, and Other Actinomycetes, Gail L. Woods, Nancy G. Warren, and Clark B. Inderlied
78. Detection and Characterization of Antimicrobial Resistance Genes in Pathogenic Bacteria, J. Kamille Rasheed, Franklin Cockerill, and Fred C. Tenover
VOLUME 2
Section VI. Virology
Volume Editor: Marie Louise Landry
Section Editors: Angela M. Caliendo, Yi-Wei Tang, and Alexandra Valsamakis
GENERAL
79. Taxonomy and Classification of Viruses, Cornelia Büchen-Osmond
80. Specimen Collection, Transport, and Processing: Virology, Michael S. Forman and Alexandra Valsamakis
81. Reagents, Stains, Media, and Cell Lines: Virology, Kimberle C. Chapin
82. Algorithms for Detection and Identification of Viruses, Marie Louise Landry, Angela M. Caliendo, Yi-Wei Tang, and Alexandra Valsamakis
RNA VIRUSES
83. Human Immunodeficiency Viruses, Brigitte P. Griffith, Sheldon Campbell, and Donald R. Mayo
84. Human T-Cell Lymphotropic Virus Types 1 and 2, Antoine Gessain, Charlene S. Dezzutti, Elliot P. Cowan, and Renu B. Lal
85. Influenza Viruses, Robert L. Atmar
86. Parainfluenza and Mumps Viruses, Diane S. Leland
87. Respiratory Syncytial Virus and Human Metapneumovirus, Yi-Wei Tang and James E. Crowe, Jr.
88. Measles and Rubella Viruses, William J. Bellini and Joseph P. Icenogle
89. Enteroviruses and Parechoviruses, José R. Romero
90. Rhinoviruses, Marie Louise Landry
91. Coronaviruses, James B. Mahony
92. Hepatitis A and E Viruses, David A. Anderson
93. Hepatitis C and G Viruses, John D. Scott and David R. Gretch
94. Rotaviruses, Caliciviruses, Astroviruses, Enteric Adenoviruses, and Other Diarrheic Viruses, Tibor Farkas and Xi Jiang
95. Rabies Virus, Lillian A. Orciari and Charles E. Rupprecht
96. Hendra and Nipah Viruses, Pierre E. Rollin, Paul Rota, Sherif Zaki, and Thomas G. Ksiazek
97. Arboviruses, Robert S. Lanciotti and Theodore F. Tsai
98. Hantaviruses, Charles F. Fulhorst and Michael D. Bowen
99. Arenaviruses and Filoviruses, Pierre E. Rollin, Stuart T. Nichol, Sherif Zaki, and Thomas G. Ksiazek
DNA VIRUSES
100. Herpes Simplex Viruses and Herpes B Virus, Keith R. Jerome and Rhoda Ashley Morrow
101. Varicella-Zoster Virus, Anne A. Gershon, Jingxian Chen, Philip LaRussa, and Sharon P. Steinberg
102. Human Cytomegalovirus, Richard L. Hodinka
103. Epstein-Barr Virus, Annika Linde and Kerstin I. Falk
104. Human Herpesviruses 6, 7, and 8, Philip E. Pellett and Graham Tipples
105. Adenoviruses, Christine Robinson and Marcela Echavarria
106. Human Papillomaviruses, Bruce K. Patterson
107. Human Polyomaviruses, Eugene O. Major, Caroline Ryschkewitsch, Alexandra Valsamakis, and Jean Hou
108. Human Parvoviruses, Jeanne A. Jordan
109. Poxviruses, Inger K. Damon
110. Hepatitis B and D Viruses, Rebecca T. Horvat and Gary E. Tegtmeier
SUBVIRAL AGENTS
111. Transmissible Spongiform Encephalopathies, Adriano Aguzzi and Markus Glatzel
Section VII. Antiviral Agents and Susceptibility Test Methods
Volume Editor: James H. Jorgensen
Section Editor: John D. Turnidge
112. Antiviral Agents, Nell S. Lurain and Kenneth D. Thompson
113. Mechanisms of Resistance to Antiviral Agents, Robert W. Shafer, Shirit Einav, and Sunwen Chou
114. Susceptibility Test Methods: Viruses, Max Q. Arens and Ella M. Swierkosz
Section VIII. Mycology
Volume Editor: Michael A. Pfaller
Section Editor: David W. Warnock
GENERAL
115. Taxonomy and Classification of Fungi, David W. Warnock
116. Specimen Collection, Transport, and Processing: Mycology, Deanna A. Sutton
117. Reagents, Stains, and Media: Mycology, Mark T. LaRocco
118. Algorithms for Detection and Identification of Fungi, Yvonne R. Shea
FUNGI
119. Candida, Cryptococcus, and Other Yeasts of Medical Importance, Kevin C. Hazen and Susan A. Howell
120. Pneumocystis, Melanie T. Cushion
121. Aspergillus, Fusarium, and Other Opportunistic Moniliaceous Fungi, Paul E. Verweij and Mary E. Brandt
122. Rhizopus, Rhizomucor, Absidia, and Other Agents of Systemic and Subcutaneous Zygomycoses, Malcolm D. Richardson and Pirkko Koukila-Kähkölä
123. Histoplasma, Blastomyces, Coccidioides, and Other Dimorphic Fungi Causing Systemic Mycoses, Mary E. Brandt and David W. Warnock
124. Trichophyton, Microsporum, Epidermophyton, and Agents of Superficial Mycoses, Richard C. Summerbell, Irene Weitzman, and Arvind A. Padhye
125. Bipolaris, Exophiala, Scedosporium, Sporothrix, and Other Dematiaceous Fungi, G. Sybren de Hoog and Roxana G. Vitale
126. Fungi Causing Eumycotic Mycetoma, G. Sybren de Hoog, Abdalla O. A. Ahmed, Michael R. McGinnis, and Arvind A. Padhye
127. Mycotoxins, William J. Halsall, Nancy C. Isham, and Mahmoud A. Ghannoum
128. Lacazia, Pythium, and Rhinosporidium, Leonel Mendoza
Section IX. Antifungal Agents and Susceptibility Test Methods
Volume Editor: James H. Jorgensen
Section Editor: John D. Turnidge
129. Antifungal Agents, Sevtap Arikan and John H. Rex
130. Mechanisms of Resistance to Antifungal Agents, Theodore C. White
131. Susceptibility Test Methods: Yeasts and Filamentous Fungi, Ana V. Espinel-Ingroff and Michael A. Pfaller
Section X. Parasitology
Volume Editor: Michael A. Pfaller
Section Editor: Lynne S. Garcia
GENERAL
132. Taxonomy and Classification of Human Parasites, Francis E. G. Cox
133. Specimen Collection, Transport, and Processing: Parasitology, Peter Deplazes, Lynne S. Garcia, and Robyn Y. Shimizu
134. Reagents, Stains, and Media: Parasitology, Susan E. Sharp
135. Algorithms for Detection and Identification of Parasites, Lynne S. Garcia, Robyn Y. Shimizu, and Graeme P. Paltridge
PARASITES
136. Plasmodium and Babesia, William O. Rogers
137. Leishmania and Trypanosoma, David A. Bruckner and Jaime A. Labarca
138. Toxoplasma, Marianna Wilson, Jeffery L. Jones, and James B. McAuley
139. Pathogenic and Opportunistic Free-Living Amebae, Govinda S. Visvesvara
140. Intestinal and Urogenital Amebae, Flagellates, and Ciliates, Amy L. Leber and Susan Novak-Weekley
141. Isospora, Cyclospora, and Sarcocystis, David S. Lindsay, Steve J. Upton, and Louis M. Weiss
142. Cryptosporidium, Lihua Xiao and Vitaliano Cama
143. Microsporidia, Rainer Weber, Alexander Mathis, and Peter Deplazes
144. Nematodes, Harsha Sheorey, Beverley-Ann Biggs, and Peter Traynor
145. Filarial Nematodes, Tess McPherson and Thomas B. Nutman
146. Cestodes, Hector H. Garcia, Juan A. Jimenez, and Hermes Escalante
147. Trematodes, Malcolm K. Jones and Donald P. McManus
148. Less Common Helminths, Gary W. Procop and Ronald C. Neafie
149. Arthropods of Medical Importance, Sam R. Telford III
Section XI. Antiparasitic Agents and Susceptibility Test Methods
Volume Editor: James H. Jorgensen
Section Editor: Mary Jane Ferraro
150. Antiparasitic Agents, Karin Leder and Peter F. Weller
151. Mechanisms of Resistance to Antiparasitic Agents, W. Evan Secor and Phuc Nguyen-Dinh
152. Susceptibility Test Methods: Parasites, Phuc Nguyen-Dinh and W. Evan Secor