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About this book

 

The science and practice of medicine has undergone a fundamental change as a result of large-scale genome projects that led to the sequencing of a number of important microbial, plant and animal genomes in the last 5 years. This book aims to combine industry standard software engineering and design principles, genomics and bioinformatics and cancer research. It focuses on creating and integrating practical, useful tools for the scientific community in the context of real-life, real-value biomedical problems that researchers face on a routine basis, rather than being just a didactic exercise in learning a programming platform. The book leverages technologies for molecular biology, genomics and bioinformatics and cancer research developed by the NIH, NCI-Center for Bioinformatics (NCICB), the National Center for Biotechnology Information (NCBI, a division of the National Library of Medicine (NLM) at the NIH) and Stanford University.

 

Table of contents

 

Foreword.- Preface.- Introduction to Bioinformatics and Java.- Introduction to Basic Local Alignment Search Tool.- Running BLAST using SwingBlast.- Facilitating PubMed Searches: JavaServers Pages and Java Servlets.- Creating a Gene Prediction and BLAST Analysis Pipeline.- cancer Biomedical Informatics Grid (caBIG).- Appendix.-Additional Resources.