Contents
Preface v
Contributors xi
PART I. METHODOLOGIES
1 Global Analysis of Gene Expression by Differential Display: A
Mathematical
Model
Shitao Yang and Peng Liang XXX
2 Automation of Fluorescent Differential Display With
Digital
Readout
Jonathan D. Meade, Yong-jig Cho, Jeffrey S. Fisher, Jamie C.
Walden,
Zhen Guo, and Peng Liang XXX
3 Ordered Differential Display (ODD)
Mikhail V. Matz and Ella A. Meleshkevitch XXX
4 GeneCalling(tm): Transcript Profiling Coupled to a Gene
Database Query
Richard A. Shimkets XXX
5 High Density Sampling Differential Display of Prokaryotic mRNAs
With
RAP-PCR
Dana M. Walters and Pierre E. Rouviere XXX
6 Vertical Arrays: Microarrays of Complex Mixtures of
Nucleic Acids
Rosana Risques, Gaelle Rondeau, Martin Judex, Michael
McClelland,
and John Welsh XXX
7 Automated Pattern Ranking in Differential Display Data Analysis
Tero Aittokallio, Pekka Ojala, Timo J. Nevalainen, and
Olli S.
Nevalainen XXX
8 Linking cDNA-AFLP-Based Gene Expression Patterns and ESTs
Ling Qin, Pjotr Prins, and Johannes Helder XXX
PART II. APPLICATIONS
9 Differentially Expressed Genes Associated With Hepatitis B Virus HBx and
MHBs Protein
Function in Hepatocellular Carcinoma
Dae-Ghon Kim XXX
10 Identification of Disease Markers by Differential Display: Prion
Disease
Michael Clinton, Gino Miele, Sunil Nandi,
and Derek
McBride XXX
11 Saturation Screening for p53 Target Genes by Digital
Fluorescent Differential
Display
Yong-Jig Cho, Susanne Stein, Roger S. Jackson II,
and Peng Liang
XXX
12 Identification of p53-Regulated Genes by the Method
of Differential
Display
Yunping Lin, Roger P. Leng, and Samuel Benchimol XXX
13 Identification by Differential Display of IL-24 Autocrine
Loop Activated by
Ras Oncogenes
Zhongjia Tan, Mai Wang, and Peng Liang XXX
14 Comprehensive Analysis of Ovarian Gene Expression
During Ovulation
Using Differential Display
Lawrence Espey XXX
15 Functional Analysis of Nocturnin: A Circadian Clock
Regulated Gene
Identified by Differential Display
Julie E. Baggs and Carla B. Green XXX
16 Isolation and Characterization of Anthocyanin
5-O-
Glucosyltransferase in Perilla Frutescens Var.
Crispa by Differential
Display
Mami Yamasaki and Kazuki Saito XXX
17 Identification of Target Genes of a Yeast
Transcriptional Repressor
Bernard Mai and Linda L. Breeden XXX
18 Detection of an mRNA Polymorphism by Differential Display
Shan Liang, S. Paul Rossby, Peng Liang, Richard C. Shelton, D. Hal
Manier,
Amitabha Chakrabarti, and Fridolin Sulser XXX
19 Silencing in Yeast: Identification of Clr4 Targets
Sergey V. Ivanov and Alla V. Ivanova XXX
20 Identification of mRNA Bound to RNA Binding
Proteins by
Differential Display
Anne Carr-Schmid, Xinfu Jiao, and Megerditch Kiledjian XXX