Table of Contents
STATISTICAL MECHANICS
Equilibrium Statistical Mechanics
Z: The Partition Function
Relation to Thermodynamics
Computing Z
Nonequilibrium Statistical Mechanics
Stochastic Processes
The Master Equation
Fluctuation Theorems
The Fokker-Planck and Langevin Equations
Sequence Alignment: A Nonequilibrium Phase Transition
BIOMOLECULES
Molecules, Code and Representation
DNA and RNA: The Building Blocks
Representing RNA Structure
Proteins
DNA
Thermal Stability of DNA: The Melting Transition
The Melting Profiles of Genomic DNA and cDNA
Hybridizing DNA
RNA
Computing RNA Secondary Structure: Combinatorics
The RNA Partition Function
RNA Phase Behavior and Folding Kinetics
Proteins
Proteins: Folding
Proteins: Docking
Electrostatics
Chromatin
Bacterial Chemotaxis: Cooperativity Once More
NETWORKS
Network Dynamics I: Deterministic
Deterministic Dynamics: ?-Repressor Expression
The Turing Insight
The Min System
Network Dynamics II: Fluctuations
Noise in Signaling
Stochastic Cascades
Stochastic Focusing
Fluctuating Gene Network Dynamics
Extrinsic vs. Intrinsic Noise
Networks: Structure
Networks as Graphs
Probability Generating Functions and Network Characteristics
Statistical Mechanics of Networks
Network Growth
INDEX
Verfasserangabe:
Ralf Blossey
Jahr:
2006
Verlag:
Boca Raton, Chapmann & Hall CRC
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Monographien
ISBN:
1584885564
2. ISBN:
9781584885566
Beschreibung:
251 S. : Ill., graph. Darst.
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Sprache:
englisch||
Fußnote:
Literaturangaben
Mediengruppe:
Ausleihbestand