Volume I
Table of contents
Preface
Part I. Cellular Biophysics
Multiparticle Direct Simulation of Photosynthetic Electron Transport Processes / Ilya B. Kovalenko, Galina Yu. Riznichenko
Selective Regulation of Protein Activity by Complex Ca2+ Oscillations: A Theoretical Study / Beate Knoke, Marko Marhl, Stefan Schuster
Phase Separation in Eukaryotic Directional Sensing / Andrea Gamba, Antonio de Candia, Stefano Di Talia, Antonio Coniglio, Federico Bussolino, Guido Serini
Protein Domains of GTPases on Membranes: Do They Rely on Turing's Mechanism? / Lutz Brusch, Perla Del Conte-Zerial, Yannis Kalaidzidis, Jochen Rink, Bianca Habermann, Marino Zerial, Andreas Deutsch
In Vitro Tubulogenesis of Endothelial Cells: Analysis of a Bifurcation Process Controlled by a Mechanical Switch / Philippe Tracqui, Patrick Namy, Jacques Ohayon
Nonexponential Time Distributions in Biocatalytic Systems: Mass Service Replacing Mass Action / Peter W. Kühl, Manfred Jobmann
Part II. Regulatory Networks
A Stochastic Model of Gene Regulation Using the Chemical Master Equation / Hilary S. Booth, Conrad J. Burden, Markus Hegland, Lucia Santoso
Piecewise-Linear Models of Genetic Regulatory Networks: Analysis of the Carbon Starvation Response in Escherichia coli / Delphine Ropers, Hidde de Jong, Jean-Luc Gouzé, Michel Page, Dominique Schneider, Johannes Geiselmann
Predicting Gene Expression from Combined Expression and Promoter Profile Similarity with Application to Missing Value Imputation / Laura L. Elo, Johannes Tuikkala, Olli S. Nevalainen, Tero Aittokallio
Chemical Organizations in the Central Sugar Metabolism of Escherichia coli / Florian Centler, Pietro Speroni di Fenizio, Naoki Matsumaru, Peter Dittrich
Transition Networks: A Unifying Theme for Molecular Simulation and Computer Science / Frank Noé, Jeremy C. Smith
Part III. Development
Pigmentation Pattern Formation in Butterfly Wings: Global Patterns on Fore- and Hindwing / Toshio Sekimura, Anotida Madzvamuse, Philip K. Maini
Agent-Based Model for Developmental Pattern Formation with Multiscale Dynamics and Varying Cell Geometry / Scott Christley, Stuart A. Newman, Mark S. Alber
Bacterial Swarming Driven by Rod Shape / Jörn Starruß, Fernando Peruani, Markus Bär, Andreas Deutsch
Stability Properties of Some Tissue-Growth Models / John R. King, Susan J. Franks
A Modified Backward Euler Scheme for Advection-Reaction-Diffusion Systems / Anotida Madzvamuse
Part IV. Biomedical Applications
Fractional Transport of Cancer Cells Due to Self-Entrapment by Fission / Alexander Iomin
Mathematical Modelling of Vascular Tumour Growth and Implications for Therapy / Jasmina Panovska, Helen M. Byrne, Philip K. Maini
A Stochastic Model of Glioblastoma Invasion / Andew M. Stein, David A. Vader, Leonard M. Sander, David A. Weitz
Morphology of Tumor Vasculature: A Theoretical Model / Katalin Bartha, Heiko Rieger
A Mathematical Model of the Cell Cycle and Its Circadian Control / Jean Clairambault, Philippe Michel, Benoît Perthame
Bone Turnover Cycle Model with a Torus-Like Steady State / Adam Moroz, David Ian Wimpenny
Modelling the Early Stages of Atherosclerosis / Michael J. Plank, Andrew Comerford, David J.N. Wall, Tom. David
Magnetic Nanoparticles for In Vivo Applications: A Numerical Modeling Study / Carlos Trenado, Daniel J. Strauss
Fluid Transport in Peritoneal Dialysis: A Mathematical Model and Numerical Solutions / Roman Cherniha, Vasyl' Dutka, Joanna Stachowska-Pietka, Jacek Waniewski
Relevance of Intracellular Replication to the Evolution of Chagas' Disease / G.S. Sibona, C.A. Condat, S. Cossy Isasi
A Finite Volume Spatial Discretisation for Taxis-Diffusion-Reaction Systems with Axi-Symmetry: Application to Fracture Healing / Alf Gerisch, Liesbet Geris
Information Content Toward a Neonatal Disease Severity Score System / Giulia Menconi, Marco Franciosi, Claudio Bonanno, Jacopo Bellazzini
Part V. Data Analysis and Model Validation
Statistical Analysis and Physical Modelling of Oligonucleotide Microarrays / Conrad J. Burden, Yvonne E. Pittelkow, Susan R. Wilson
Validation of Human Alternative Splice Forms Using the EASED Platform and Multiple Splice Site Discriminating Features / Ralf Bortfeldt, Alexander Herrmann, Heike Pospisil, Stefan Schuster
Gaussian Mixture Decomposition of Time-Course DNA Microarray Data / Joanna Polanska, Piotr Widlak, Joanna Rzeszowska-Wolny, Marek Kimmel, Andrzej Polanski
SVD Analysis of Gene Expression Data / Krzysztof Simek, Michal Jarzab
Index
Volume II
Table of contents
Preface
Part I. Epidemiology
Could Low-Efficacy Malaria Vaccines Increase Secondary Infections in Endemic Areas? / Robert J. Smith?
Modeling of the Invasion of a Fungal Disease over a Vineyard / J.-B. Burie, A. Calonnec, M. Langlais
An Algorithm for Parameter Estimation in Nosocomial Infections / Nico Stollenwerk and Rafael Mikolajczyk
Part II. Evolution and Ecology
Evolutionarily Stable Investment in Anti-Predatory Defences and Aposematic Signalling / Mark Broom, Graeme D. Ruxton, Michael P. Speed
The Tangled Nature Model of Evolutionary Ecology: An Overview / Simon Laird, Daniel Lawson, Henrik Jeldtoft Jensen
Relative Advantage and Fundamental Theorems of Natural Selection / József Garay
Competitive Exclusion Between Year-Classes in a Semelparous Biennial Population / Ryusuke Kon
On the Impact of Winter Conditions on the Dynamics of an Isolated Population / Lev V. Nedorezov, E.V. Volkova, Alexandr M. Sadykov
Planning for Biodiversity Conservation Using Stochastic Programming / Trevon Fuller, David P. Morton, Sahotra Sarkar
A Diffusion-Reaction Model of a Mixed-Culture Biofilm Arising in Food Safety Studies / Hermann J. Eberl, Heidi Schraft
The Periodical Population Dynamics of Lottery Models Including the Effect of Undeveloped Seeds / Shigehide Iwata, Ryusuke Kon, Yasuhiro Takeuchi
Part III. Immunology
An Automata-Based Microscopic Model Inspired by Clonal Expansion / Francesco Zanlungo, Sandro Rambaldi, Giorgio Turchetti
Th1Th2 Regulation and Allergy: Bifurcation Analysis of the Non-Autonomous System / Reinhard Vogel, Ulrich Behn
Architecture of Randomly Evolving Idiotypic Networks / Holger Schmidtchen, Ulrich Behn
Analysis of Infectious Mortality by Means of the Individualized Risk Model / Tatiana E. Sannikova
Part IV. Neural Systems and the Brain
Neuromorphological Phenotyping in Transgenic Mice: A Multiscale Fractal Analysis / Andreas Schierwagen, Luciano da Fontoura Costa, Alan Alpar, Ulrich Gärtner, Thomas Arendt
A Quantitative Model of ATP-Mediated Calcium Wave Propagation in Astrocyte Networks / William G. Gibson, Les Farnell, Max R. Bennett
Dynamics of Neural Fields with Distributed Transmission Speeds / Fatihcan M. Atay, Axel Hutt
Estimation of Differential Entropy for Positive Random Variables and Its Application in Computational Neuroscience / David Hampel
Dynamics of Integrate-and-Fire Models / Joanna Tyrcha
A Monte Carlo Method Used for the Identification of the Muscle Spindle / Vassiliki K. Kotti, Alexandros G. Rigas
Mechanisms of Coincidence Detection in the Auditory Brainstem: Examples / Petr Marsalek, Marek Drapal
Multi-Scale Analysis of Brain Surface Data / Thomas Hübsch, Marc Tittgemeyer
The Spike Generation Processes: A Case for Low Level Computation / Tjeerd olde Scheper
Part V. Innovative Mathematical Methods and Education
Offdiagonal Complexity: A Computationally Quick Network Complexity MeasureApplication to Protein Networks and Cell Division / Jens Christian Claussen
An Analytically Solvable Asymptotic Model of Atrial Excitability / Radostin D. Simitev, Vadim N. Biktashev
A Bayesian Approach to the Quantitative Polymerase Chain Reaction / Nadia Lalam, Christine Jacob
A Model of Poplar (Populus sp.) Physiology and Morphology Based on Relational Growth Grammars / Gerhard Buck-Sorlin, Ole Kniemeyer, Winfried Kurth
Asymptotic Behavior of a Two-Dimensional KellerSegel Model with and without Density Control / Vincent Calvez, Yasmin Dolak-Struß
Saturation Effects in Population Dynamics: Use Branching Processes or Dynamical Systems? / Christine Jacob
Modelling and Simulation by Stochastic Interacting Particle Systems / Tobias Klauß, Anja Voß-Böhme
Teaching Mathematical Biology in a Summer School for Undergraduates / Gerda de Vries, Thomas Hillen
Index